| Caenophidia | |
This template contains a phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species in the combined phylogenomic and supermatrix analysis by Zheng & Wiens (2016))[1].
The template optionally uses {{clade transclude}} as a wrapper that allows partial transclusion of parts of the phylogenetic tree selected by |label= or |subtree=.
Full phylogenetic tree
[edit]{{Phylogeny/Squamata}}
| Squamata |
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)_Tribolonotus_novaeguineae.jpg){kind=small}
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_(Lacerta_agilis).jpg){kind=small}
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_(Varanus_griseus).png)
_(Chamaeleo_calyptratus).jpg){kind=small}
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_1977,_Cyclura_cornuta.jpg){kind=small}
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Partial transclusion of groups
[edit]A simple example:
{{Phylogeny/Squamata|label=Toxicofera|wrap=}}
| Toxicofera |
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Note that the above has three hidden clades that can be expanded and collapsed. The interactive elements can be eliminated with the parameter |nohidden=, as shown in the following example:
{{Phylogeny/Squamata|label=Gekkota|wrap=|nohidden=}}
| Gekkota |
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The above examples used parameter |wrap= to add an outer clade and label, which defaults to the name of the label or subtree selected. Omitting |wrap= allows a custom cladogram to be build around the selection from the template.
.
{{clade |style=background-color:#eeeeff;
|label1=[[Laterata]]
|1={{Phylogeny/Squamata|label=LATERATA|nohidden=}}
}}
| Laterata |
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References
[edit]Some useful references:
- Zheng & Wiens (2016))[1]
- Pyron et al (2013)[2]
- Vidal & Hedges (2009)[3]
- Reptile Database: Higher Taxa in Extant Reptiles[4]
- Reeder et al (2015).[5]
- Hedges 2014 (skinks)[6]
- Fry al al (2006) (evolution of venom) [7]
- Snakes
- ^ a b Zheng, Yuchi; Wiens, John J. (2016). "Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species". Molecular Phylogenetics and Evolution. 94 (Pt B): 537–547. doi:10.1016/j.ympev.2015.10.009. PMID 26475614.
- ^ Pyron, R; Burbrink, Frank T; Wiens, John J (2013). "A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes". BMC Evolutionary Biology. 13 (1): 93. Bibcode:2013BMCEE..13...93P. doi:10.1186/1471-2148-13-93. ISSN 1471-2148. PMC 3682911. PMID 23627680.
- ^ Vidal, N; Hedges, SB (2009). "The molecular evolutionary tree of lizards, snakes, and amphisbaenians". Comptes Rendus Biologies. 332 (2–3): 129–39. doi:10.1016/j.crvi.2008.07.010. PMID 19281946. S2CID 23137302.
- ^ Uetz, P.; et al. (eds.). "Higher Taxa in Extant Reptiles". The Reptile Database. Retrieved 12 October 2019.
- ^ Reeder, Tod W.; Townsend, Ted M.; Mulcahy, Daniel G.; Noonan, Brice P.; Wood, Perry L.; Sites, Jack W.; Wiens, John J. (2015). "Integrated Analyses Resolve Conflicts over Squamate Reptile Phylogeny and Reveal Unexpected Placements for Fossil Taxa". PLOS ONE. 10 (3): e0118199. Bibcode:2015PLoSO..1018199R. doi:10.1371/journal.pone.0118199. PMC 4372529. PMID 25803280.
- ^ Hedges, SB (2014). "The high-level classification of skinks (Reptilia, Squamata, Scincomorpha)". Zootaxa. 3765 (4): 317–338. doi:10.11646/zootaxa.3765.4.2. PMID 24870904.
- ^ Fry, Brian G.; et al. (February 2006). "Early evolution of the venom system in lizards and snakes" (PDF). Nature. 439 (7076): 584–588. Bibcode:2006Natur.439..584F. doi:10.1038/nature04328. PMID 16292255. S2CID 4386245.
- ^ Figueroa, Alex; McKelvy, Alexander D.; Grismer, L. Lee; Bell, Charles D.; Lailvaux, Simon P. (2016). Parmakelis, Aristeidis (ed.). "A Species-Level Phylogeny of Extant Snakes with Description of a New Colubrid Subfamily and Genus". PLOS ONE. 11 (9): e0161070. Bibcode:2016PLoSO..1161070F. doi:10.1371/journal.pone.0161070. ISSN 1932-6203. PMC 5014348. PMID 27603205.
- ^ R. Graham Reynolds; Matthew L. Niemiller; Liam J. Revell (2014). "Toward a Tree-of-Life for the boas and pythons: Multilocus species-level phylogeny with unprecedented taxon sampling". Molecular Phylogenetics and Evolution. 71: 201–213. doi:10.1016/j.ympev.2013.11.011. PMID 24315866.
- ^ Zaher, Hussam; Murphy, Robert W.; Arredondo, Juan Camilo; Graboski, Roberta; Machado-Filho, Paulo Roberto; Mahlow, Kristin; Montingelli, Giovanna G.; Quadros, Ana Bottallo; Orlov, Nikolai L.; Wilkinson, Mark; Zhang, Ya-Ping; Grazziotin, Felipe G. (2019). Joger, Ulrich (ed.). "Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes)". PLOS ONE. 14 (5): e0216148. Bibcode:2019PLoSO..1416148Z. doi:10.1371/journal.pone.0216148. ISSN 1932-6203. PMC 6512042. PMID 31075128.